I'm using 5.9 version on Windows 7. The problem is Notepad++ fails to remember settings (style and opened sessions) sporadically.
Not editing the configs manually.
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1 Go to X:\Notepad++Portable\App\Notepad++
2 Select all files and folders
3 Uncheck read only check mark, apply to sub-folders when prompted.
4 Test
Reason: Notepad++Portable may not be saving the config on the files copied to this folder. Which is yet to prove BTW.
EDIT 1: Nope that didn't work.