Folder/Directory organization

Hello,
I have a few apps that I use in the portableapps platform so that I have a common launcher for the apps. Because these apps were not installed via portableapps platform and they my own apps, I have stored it all under a folder.

After doing that I am no longer able to find the launchers on portableapp list neither it returns any search results.

So if I have a folder "App1" and "App2" at the root (PortableApps) directory, I am able to search and find the launcher via the portableapp.com platform, but if I move these 2 folders under a "myapps" folder (e.g. PortableApps\myapps\App1 it stops being searchable.

Is this working per design or this is something that could be customized?