I am trying to do a complete backup of my thumbdrive using the included PortableApps backup utility. I have tried selecting or unselecting every option but the backup always fails. Can someone please help? Is there some kind of size limit? Will it only do a complete backup if only portableapps are installed? What am I missing?
 
      
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https://portableapps.com/node/18535
Have you checked your drive for errors? Based on this and your Lightning issues (Lightning works just fine with TBP), I'd wager you have some drive errors.
Sometimes, the impossible can become possible, if you're awesome!