HDD Benchmarking / Iometer
Iometer seems pretty good, it was made by Intel, so it must be fairly good...
Notability because it's on Wikipedia: http://en.wikipedia.org/wiki/Iometer
Open Source because it's on SourceForge: http://iometer.sourceforge.net/
I also came across a similar application which is also open source found here: http://www.iozone.org/
There's loads of other HDD benchmark tools such as CrystalDiskMark and HD tune, but these are only freeware, and not open source, nor are they portable.
With HD Tune in mind I also came across some S.M.A.R.T. tools...
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